Hugo_Symbol Entrez_Gene_Id Center NCBI_Build Chromosome Start_position End_position Strand Variant_Classification Variant_Type Reference_Allele Tumor_Seq_Allele1 Tumor_Seq_Allele2 dbSNP_RS dbSNP_Val_Status Tumor_Sample_Barcode Matched_Norm_Sample_Barcode Match_Norm_Seq_Allele1 Match_Norm_Seq_Allele2 Tumor_Validation_Allele1 Tumor_Validation_Allele2 Match_Norm_Validation_Allele1 Match_Norm_Validation_Allele2 Verification_Status Validation_Status Mutation_Status Sequencing_Phase Sequence_Source Validation_Method Score BAM_file Sequencer Tumor_Sample_UUID Matched_Norm_Sample_UUID transcript_name strand transcript_status amino_acid_change ucsc_cons normal_depth normal_vaf tumor_depth tumor_vaf rna_depth rna_vaf polyphen sift condel domain FLG 2312 genome.wustl.edu 37 1 152275827 152275827 + Silent SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_002016.1 -1 reviewed p.S3845 0.000 280 0% 454 18.1% 1 0% - - - HMMPfam_Filaggrin TNN 63923 genome.wustl.edu 37 1 175113661 175113661 + Missense_Mutation SNP G G C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_022093.1 +1 validated p.R1245T 1.000 101 0% 192 9.9% 0 - possibly_damaging(0.697) deleterious(0.01) deleterious(0.655) HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like DISP1 84976 genome.wustl.edu 37 1 223116667 223116667 + Missense_Mutation SNP A A G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_032890.2 +1 reviewed p.N168D 0.983 51 0% 80 22.5% 3 33.3% benign(0.017) tolerated(0.29) neutral(0.030) NULL ITPKB 3707 genome.wustl.edu 37 1 226923665 226923665 + Missense_Mutation SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_002221.3 -1 reviewed p.V499M 0.004 27 0% 25 56% 12 66.6% benign(0.091) tolerated(0.81) neutral(0.007) NULL OBSCN 84033 genome.wustl.edu 37 1 228403424 228403424 + Silent SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_001098623.1 +1 reviewed p.R663 0.105 16 0% 28 35.7% 2 0% - - - HMMSmart_SM00409,superfamily_Immunoglobulin GPR75 10936 genome.wustl.edu 37 2 54081345 54081345 + Silent SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_006794.2 -1 validated p.T183 0.857 144 0% 193 53.4% 3 100% - - - HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like LCT 3938 genome.wustl.edu 37 2 136552311 136552313 + In_Frame_Del DEL TCC TCC - novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 TCC TCC Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_002299.2 -1 reviewed p.R1670in_frame_del 1.000:1.000:1.000 - - - - - - - - - HMMPfam_Glyco_hydro_1,superfamily_Glyco_hydro_cat STK39 27347 genome.wustl.edu 37 2 168931652 168931652 + Silent SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_013233.2 -1 reviewed p.S393 0.996 305 0% 264 45.5% 0 - - - - NULL CHL1 10752 genome.wustl.edu 37 3 431122 431122 + Missense_Mutation SNP A A G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_006614.2 +1 reviewed p.D812G 0.945 60 0% 95 52.6% 1 0% benign(0) tolerated(0.12) neutral(0.261) superfamily_Fibronectin type III IL5RA 3568 genome.wustl.edu 37 3 3144358 3144358 + Splice_Site SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_000564.3 -1 reviewed e2+1 0.968 237 0.8% 189 27.5% 0 - - - - - DOCK3 1795 genome.wustl.edu 37 3 51350282 51350282 + Missense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_004947.3 +1 validated p.D1068N 1.000 576 0% 882 32.1% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL VGLL3 389136 genome.wustl.edu 37 3 87017746 87017746 + Missense_Mutation SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_016206.2 -1 validated p.D311N 1.000 96 0% 124 43.5% 0 - possibly_damaging(0.795) tolerated(0.24) neutral(0.336) NULL DCAF16 54876 genome.wustl.edu 37 4 17805219 17805219 + Silent SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_017741.3 -1 provisional p.L182 1.000 344 0% 475 44.6% 8 62.5% - - - NULL FBXW7 55294 genome.wustl.edu 37 4 153249456 153249456 + Missense_Mutation SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_033632.2 -1 reviewed p.R441Q 1.000 210 0% 375 43.7% 2 50% probably_damaging(0.993) deleterious(0) deleterious(0.895) HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40 FBXW7 55294 genome.wustl.edu 37 4 153259012 153259013 + Frame_Shift_Del DEL AT AT - novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 AT AT Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_033632.2 -1 reviewed p.M268fs 1.000:1.000 - - - - - - - - - superfamily_WD40 repeat-like FGA 2243 genome.wustl.edu 37 4 155508049 155508049 + Nonsense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_000508.3 -1 reviewed p.R178* 1.000 127 0% 188 44.1% 0 - - - - HMMPfam_Fib_alpha STOX2 56977 genome.wustl.edu 37 4 184931824 184931824 + Silent SNP C C G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_020225.1 +1 provisional p.L611 1.000 36 0% 45 11.1% 2 0% - - - NULL MAN1A1 4121 genome.wustl.edu 37 6 119628109 119628109 + Missense_Mutation SNP T T G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_005907.2 -1 reviewed p.N218H 1.000 403 0% 417 23% 1 0% probably_damaging(1) deleterious(0.02) deleterious(0.883) HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47 LOC100132858 100132858 genome.wustl.edu 37 7 31439 31439 + Splice_Site SNP T T A rs148512677 by1000genomes TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 XM_001715131.2 -1 model e4-2 0.007 7 0.000 7 0.857 0 - - - - - C9orf93 203238 genome.wustl.edu 37 9 15874644 15874644 + Missense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_173550.2 +1 predicted p.E1195K 1.000 99 0% 164 38.4% 2 50% possibly_damaging(0.806) deleterious(0) deleterious(0.748) NULL FGFR2 2263 genome.wustl.edu 37 10 123239395 123239399 + Frame_Shift_Del DEL GTGTG GTGTG - novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 GTGTG GTGTG Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_022970.3 -1 reviewed p.P814fs 0.604:0.964:1.000:1.000:1.000 - - - - - - - - - NULL KRTAP5-10 387273 genome.wustl.edu 37 11 71276787 71276787 + Missense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_001012710.1 +1 validated p.V52M 0.993 78 0% 113 63.7% 1 100% unknown(0) tolerated(0.28) - NULL EPS8 2059 genome.wustl.edu 37 12 15774273 15774273 + Missense_Mutation SNP A A G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_004447.5 -1 reviewed p.F816S 1.000 281 0% 337 45.7% 2 0% probably_damaging(0.999) deleterious(0) deleterious(0.935) NULL ENDOU 8909 genome.wustl.edu 37 12 48107062 48107062 + Missense_Mutation SNP G G C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_006025.3 -1 reviewed p.F246L 1.000 235 0% 346 35% 0 - probably_damaging(0.998) deleterious(0) deleterious(0.919) HMMPfam_XendoU SCYL2 55681 genome.wustl.edu 37 12 100709473 100709473 + Silent SNP T T C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 T T Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_017988.4 +1 provisional p.P411 1.000 223 0% 341 44.6% 2 0% - - - superfamily_ARM repeat ATP5EP2 432369 genome.wustl.edu 37 13 28519519 28519519 + Silent SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 ENST00000381026 +1 known p.N41 0.318 109 0% 74 13.5% 0 - - - - HMMPfam_ATP-synt_Eps,superfamily_ATP_synth_E ATP11A 23250 genome.wustl.edu 37 13 113487173 113487173 + Splice_Site SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_032189.3 +1 reviewed e14-1 1.000 99 0% 184 35.9% 0 - - - - - CEP128 145508 genome.wustl.edu 37 14 80993286 80993286 + Missense_Mutation SNP G G C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_152446.3 -1 validated p.S1000C 0.416 233 0% 535 14% 2 0% unknown(0) deleterious(0.02) - NULL AHNAK2 113146 genome.wustl.edu 37 14 105413132 105413132 + Missense_Mutation SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_138420.2 -1 validated p.V2886I 0.000 153 0.7% 368 21.2% 0 - possibly_damaging(0.605) tolerated(0.24) neutral(0.247) NULL CA12 771 genome.wustl.edu 37 15 63632540 63632540 + Missense_Mutation SNP G G T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_001218.3 -1 reviewed p.P232T 1.000 58 0% 134 49.3% 1 100% probably_damaging(1) tolerated(0.08) deleterious(0.800) HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase PLEKHO2 80301 genome.wustl.edu 37 15 65157204 65157204 + Missense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_025201.4 +1 validated p.R197Q 0.107 29 0% 54 37% 5 20% benign(0.027) tolerated(0.62) neutral(0.005) NULL NOX5 79400 genome.wustl.edu 37 15 69325606 69325606 + Missense_Mutation SNP A A C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_024505.3 +1 validated p.S264R 1.000 3 0.000 10 0.700 0 - possibly_damaging(0.923) deleterious(0.04) deleterious(0.722) HMMPfam_Ferric_reduct ZKSCAN2 342357 genome.wustl.edu 37 16 25258239 25258239 + Missense_Mutation SNP C C G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_001012981.4 -1 validated p.L426F 0.988 200 0% 266 44.4% 1 0% probably_damaging(0.999) deleterious(0.01) deleterious(0.896) NULL ZFHX3 463 genome.wustl.edu 37 16 72831055 72831079 + Frame_Shift_Del DEL TGGGACCTGAACCTGAGCCTTCAGA TGGGACCTGAACCTGAGCCTTCAGA - novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 TGGGACCTGAACCTGAGCCTTCAGA TGGGACCTGAACCTGAGCCTTCAGA Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_006885.3 -1 reviewed p.L1835fs 0.505:0.997:1.000:1.000:1.000:0.960:1.000:1.000:1.000:0.880:0.996:1.000:1.000:1.000:1.000:0.951:1.000:1.000:1.000:1.000:1.000:0.998:1.000:0.985:0.726 - - - - - - - - - NULL ZNF594 84622 genome.wustl.edu 37 17 5085167 5085167 + Missense_Mutation SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 ENST00000381752 -1 known p.G7E 1.000 284 0% 260 84.6% 0 - probably_damaging(1) tolerated(0.11) deleterious(0.772) NULL TP53 7157 genome.wustl.edu 37 17 7574034 7574034 + Splice_Site SNP C C G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_000546.4 -1 reviewed e9-1 1.000 31 0% 67 80.6% 25 100% - - - - NLRP8 126205 genome.wustl.edu 37 19 56481932 56481932 + Missense_Mutation SNP C C A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_176811.2 +1 provisional p.P802T 0.005 171 0% 126 10.3% 0 - probably_damaging(0.997) tolerated(0.99) neutral(0.466) superfamily_RNI-like ZNF334 55713 genome.wustl.edu 37 20 45130951 45130951 + Missense_Mutation SNP G G T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_018102.3 -1 validated p.H343N 0.999 267 0% 432 14.6% 1 0% probably_damaging(0.992) deleterious(0) deleterious(0.892) HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667 CLDN17 26285 genome.wustl.edu 37 21 31538891 31538891 + Silent SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_012131.2 -1 reviewed p.F15 0.383 65 1.5% 75 38.7% 0 - - - - HMMPfam_PMP22_Claudin TSPEAR 54084 genome.wustl.edu 37 21 45945583 45945583 + Missense_Mutation SNP A A G novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 A A Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_144991.2 -1 provisional p.F430S 1.000 109 0% 138 45.7% 1 100% probably_damaging(1) deleterious(0) deleterious(0.945) HMMPfam_EPTP ENSG00000211459 0 genome.wustl.edu 37 MT 737 737 + RNA SNP C C T novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 C C Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 ENST00000389680 +1 known NULL NULL 308 0% 294 17% 3738 9.8% - - - - SRPX 8406 genome.wustl.edu 37 X 38016244 38016244 + Missense_Mutation SNP G G C novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_006307.4 -1 validated p.L332V 0.991 56 0% 98 48% 7 71.4% possibly_damaging(0.608) deleterious(0.01) deleterious(0.616) NULL ODZ1 10178 genome.wustl.edu 37 X 123518366 123518366 + Missense_Mutation SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_014253.3 -1 reviewed p.R2132C 1.000 333 0% 375 25.6% 0 - probably_damaging(1) deleterious(0) deleterious(0.945) NULL BCORL1 63035 genome.wustl.edu 37 X 129139240 129139240 + Silent SNP G G A novel TCGA-D1-A16I-01A-11D-A12J-09 TCGA-D1-A16I-10A-01D-A12J-09 G G Unknown Untested Somatic Phase_IV WXS none 1 dbGAP Illumina GAIIx ef5ec03d-0f9f-427f-aee9-f1b70aca300a 13491385-862c-4cf8-a61e-0568e3440d63 NM_021946.3 +1 reviewed p.V11 1.000 46 0% 65 52.3% 3 100% - - - NULL