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E-GEOD-2841 GSE2841, GDS2113 transcription profiling by array Homo sapiens

Transcription profiling of human pheochromocytomas of various genetic origins

Submitted June 27, 2005 ·Released June 21, 2007 ·Updated March 27, 2012
76
Samples
76
Assays
1
Array Platforms
1
References
Description

Pheochromocytomas are neural crest-derived tumors that arise from inherited or sporadic mutations in at least six independent genes: RET, VHL, NF1, and subunits B, C and D of succinate dehydrogenase (SDH). The proteins encoded by these multiple genes regulate distinct functions. To identify molecular interactions between the distinct pathways we performed expression profiling of a large cohort of pheochromocytomas. We show here a functional link between tumors with VHL mutations and those with disruption of the genes encoding for succinate dehydrogenase (SDH) subunits B (SDHB) and D (SDHD). A transcription profile of reduced oxidoreductase is detected in all three of these tumor types, together with an angiogenesis/hypoxia profile typical of VHL dysfunction. The oxidoreductase defect, not previously detected in VHL-null tumors, is explained by suppression of the SDHB protein, a component of mitochondrial complex II. The decrease in SDHB is also noted in tumors with SDHD mutations. Gain-of-function and loss-of-function analyses show that the link between hypoxia signals (via VHL) and mitochondrial signals (via SDH) is mediated by HIF1?. These findings explain the shared features of pheochromocytomas with VHL and SDH mutations and suggest an additional mechanism for increased HIF1? activity in tumors.

References
A HIF1alpha regulatory loop links hypoxia and mitochondrial signals in pheochromocytomas.
Patricia L M Dahia,Ken N Ross,Matthew E Wright,C�sar Y Hayashida,Sandro Santagata,Marta Barontini,Andrew L Kung,Gabriela Sanso,James F Powers,Arthur S Tischler,Richard Hodin,Shannon Heitritter,Francis Moore,Robert Dluhy,Julie Ann Sosa,I Tolgay Ocal,Diana E Benn,Deborah J Marsh,Bruce G Robinson,Katherine Schneider,Judy Garber,Seth M Arum,M�rta Korbonits,Ashley Grossman,Pascal Pigny,S�rgio P A Toledo,Vania Nos�,Cheng Li,Charles D Stiles
PMID: 16103922
Array Platforms
A-AFFY-33
Affymetrix GeneChip Human Genome HG-U133A [HG-U133A](76 items)
Sample Attributes
ClinicalHistory
inherited mutation, sporadic mutation
DiseaseState
adrenal gland pheochromocytoma, extra-adrenal sympathetic paraganglioma
Genotype
MEN 2A mutation, NF1 mutation, SDHB mutation, SDHD mutation, unidentified mutation, VHL mutation
Organism
Homo sapiens
OrganismPart
adrenal gland, extra-adrenal paraganglia
Experiment Info
Accession
E-GEOD-2841
GEO ID
GSE2841, GDS2113
Type
transcription profiling by array
Organism
Homo sapiens
Submitted
June 27, 2005
Released
June 21, 2007
Updated
March 27, 2012
Submitter
Patricia L. Dahia
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