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E-GEOD-34928 GSE34928 transcription profiling by array Homo sapiens

Gene Expression in Normal and Tumor Ovarian Epithelial Cells from Non-carriers and Heterozygous Carriers of a BRCA French Canadian Mutation

·发布 2012年6月14日 ·更新 2012年6月26日
13
样本数
13
实验数
1
芯片平台
1
相关文献
实验描述

We hypothesized that the transcriptome of primary cultures of morphologically normal ovarian surface epithelial cells could be altered by the presence of a heterozygous BRCA1 or BRCA2 mutation. We aimed to discover early events associated to ovarian carcinogenesis, which could represent putative targets for preventive strategies of this silent killer tumor. We identified the first molecular signature associated with French Canadian BRCA1 or BRCA2 founder mutations in morphologically normal ovarian epithelial cells. We discovered that wild-type and mutated BRCA2 allelic transcripts were expressed not only in morphologically normal but also in tumor cells from 8765delAG BRCA2 carriers. Further analysis of morphologically normal ovarian and tumor cells from C4446T BRCA1 carriers lead to the same observation. Our data support the idea that one single hit in BRCA1 or BRCA2 is sufficient to alter the transcriptome of phenotypically normal ovarian epithelial cell. The highest level of BRCA2 mutated allele transcript expression was measured in cells originating from the most aggressive ovarian tumor. The penetrance of the mutation and the aggressiveness of the related tumor could depend on a dosage effect of the mutated allele transcript. We studied the molecular profiles associated with 5 a priori classes of samples : 4 non-familial morphologically normal ovarian surface epithelium (NOSEs) : NM class, 2 BRCA1-mutated NOSEs : M1 class, 3 BRCA2-mutated NOSEs : M2 class, 3 BRCA1-mutated ovarian tumor cells (TOVs) : TM1 class and one BRCA2-mutated TOV :TM2 class. No technical replicates were included in this study. The following contrasts were computed : NM vs. M1, NM vs. M2, M1 vs. M2, M1 vs. TM1 and M (M1 union M2) vs. TM (TM1 union TM2).

参考文献
Allelic transcripts dosage effect in morphologically normal ovarian cells from heterozygous carriers of a BRCA1/2 French Canadian founder mutation.
Abd-Rabbo D, Abaji C, Cardin GB, Filali-Mouhim A, Arous C, Portelance L, Escobar E, Cloutier S, Tonin PN, Provencher DM, Mes-Masson AM, Maugard CM
PMID: 22401979
芯片平台
A-AFFY-32
Affymetrix GeneChip HuGeneFL Array [HuGeneFL](13 例)
样本属性
age
37, 38, 43, 44, 45, 48, 49, 50, 51
age at surgery
40, 56, 57, 60
BioSourceProvider
Biomaterial provider : Fonds de la recherche en santé du Québec (FRSQ) Cancer Research Network (RR-Cancer) Tumor Bank of the Centre hospitalier de l’Université de Montréal (CHUM), Biomaterial provider : Fonds de la recherche en santé du Québec (FRSQ) Cancer Research Network (RR-Cancer) Tumor Bank of the Centre hospitalier de l’Université de Montréal (CHUM)., Fonds de la recherche en santé du Québec (FRSQ) Cancer Research Network (RR-Cancer) Tumor Bank of the Centre hospitalier de l’Université de Montréal (CHUM), Fonds de la recherche en santé du Québec (FRSQ) Cancer Research Network (RR-Cancer) Tumor Bank of the Centre hospitalier de l’Université de Montréal (CHUM).
cancer history
Colon cancer at the age of 47, breast cancer at the age of 49 and familial cancer history, Familial cancer history, No
carrier
No, Yes
cell origin
Morphologically normal ovarian surface epithelium cells, Primary culture - Ascitis cells - Cystadenocarcinoma Endometrioid, Primary culture - Ascitis cells - Cystadenocarcinoma Serous papillary, Primary culture - Ascitis Cells Cystadenocarcinoma Serous, Primary culture - Epiploon Cystadenocarcinoma Serous
class
M1, M2, NM, TM1, TM2
culture medium
OSE
familial mutation
BRCA1 2953del3+C, BRCA1 4446C>T, BRCA1 C4446T, BRCA2 8765delAG, BRCA2 G6085T, Not Applicable
grade
2, 3, Not Applicable
Organism
Homo sapiens
passage
11, 13, 4, 5, 6, 7, 8, 9
Stage
IIIC, IV, Not Applicable
实验信息
登记号
E-GEOD-34928
GEO 编号
GSE34928
实验类型
transcription profiling by array
物种
Homo sapiens
发布日期
2012年6月14日
更新日期
2012年6月26日
提交者
Sofie Cloutier、 Ali Filali-Mouhim、 Anne M Mes-Masson、 Diala Abd-Rabbo、 Patricia N Tonin、 Diane M Provencher、 Diala Abed-Rabbo、 Christine M Maugard、 L Portelance、 Guillaume B Cardin、 Christine Abaji、 Caroline Arous、 D E Escobar
分析服务
分析服务

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