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E-GEOD-43384 GSE43384 ChIP-chip by tiling array Saccharomyces cerevisiae

Budding yeast ATM/ATR contribute to meiotic double-strand-break (DSB) homeostasis by down-regulating Rec114, an essential component of the DSB-machinery

·Released June 1, 2013 ·Updated May 2, 2014
12
Samples
6
Assays
1
Array Platforms
Description

In most organisms, meiotic recombination begins with programmed DNA double strand break (DSB) formation by Spo11. Here, we present evidence that Tel1/Mec1, the budding yeast ATM/ATR, regulate DSB formation by phosphorylating Rec114, an essential Spo11-accessory protein. Analyses of a non-phosphorylatable- or phosphomimetic- alleles of rec114 revealed that DSB-dependent phosphorylation of Rec114 limited its association with DSB-hotspots resulting in reduction in DSB formation. Also observed were the impact of Rec114 phosphorylation on its homolog synapsis-associated removal from chromosomes and NDT80-dependent turnover. Specifically, we found that the synapsis- and NDT80-dependent Rec114 downregulation occurred later in the rec114 mutant with a reduced Spo11-catalysis, but earlier in the other with an enhanced catalysis, strongly implicating the existence of a feedback mechanism coupling the extent of Spo11-catalysis to Rec114 activity. Taken together, these observations suggest that three different mechanisms of down regulating Rec114 contribute to meiotic DSB homeostasis, a feedback mechanism to maintain the number of meiotic DSBs at the developmentally programmed level. 6 genome wide ChIPchip sets: 3 for meiotic DSB formation (Spo11-ChIP) and 3 for protein-DNA association (Rec114-ChIP), each for wild type and two mutants during meiosis (corresponding to the main Figure 3, as well as to Figures S3, S4, S5).

Array Platforms
A-GEOD-7250
[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array(6 items)
Sample Attributes
antibody
mouse, anti-myc 9E10, none, rabbit, anti-Rec114, affinity purified
bait protein
none, Rec114, Spo11-myc
genotype
None, FKY4583: Mat a/alpha, REC114::hphMX4/REC114::hphMX4, FKY4586: Mat a/alpha, rec114-8A::hphMX4/rec114-8A::hphMX4, FKY4589: Mat a/alpha, rec114-8D::hphMX4/rec114-8D::hphMX4, JCY1658: Mata/alpha, Spo11-myc18::TRP1/Spo11-myc18::TRP1, rad50S::URA3/rad50S::URA3, REC114-8A::hphMX4/REC114-8A::hphMX5, JCY1662: Mata/alpha, Spo11-myc18::TRP1/Spo11-myc18::TRP1, rad50S::URA3/rad50S::URA3, REC114-8D::hphMX4/REC114-8D::hphMX6, JCY1667: Mata/alpha, Spo11-myc18::TRP1/Spo11-myc18::TRP1, rad50S::URA3/rad50S::URA3, REC114::hphMX4/REC114::hphMX4
meiotic timepoint
None, 4 hours, 6 hours
organism
Saccharomyces cerevisiae
strain or line
None, SK1
Experiment Info
Accession
E-GEOD-43384
GEO ID
GSE43384
Type
ChIP-chip by tiling array
Organism
Saccharomyces cerevisiae
Released
June 1, 2013
Updated
May 2, 2014
Submitter
Anthony L. Johnsona、 Maria-Elisabetta Serrentinoc、 Valerie Borde、 Franz Klein、 Silvia Panizza、 Jesus Carballo、 Franz Klein、 Marco Geyomat、 Rita Cha
Analysis Services
Analysis Services

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