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E-GEOD-52970 GSE52970, SRP033495 ChIP-seq Saccharomyces cerevisiae

Rec114 ChIP-seq

·Released July 21, 2014 ·Updated Sept. 6, 2014
96
Samples
96
Assays
Description

DNA duplication is intimately connected to setting up post-replicative chromosome structures and events, but molecular details of this coordination are not well understood. A striking example occurs during yeast meiosis, where replication locally influences timing of the DNA double-strand breaks (DSBs) that initiate recombination. We show here that replication-DSB coordination is eliminated by overexpressing Dbf4-dependent Cdc7 kinase (DDK) or removing Tof1 or Csm3, components of the replication fork protection complex (FPC). DDK physically associates with Tof1, and Tof1 is dispensable for replication-DSB coordination if DDK is artificially tethered to replisomes. Furthermore, DDK phosphorylation of the DSB-promoting factor Mer2 is locally coordinated with replication, dependent on Tof1. These findings indicate that DDK recruited by FPC to replisomes phosphorylates chromatin-bound Mer2 in the wake of the replication fork, thus synchronizing replication with an early prerequisite for DSB formation. This may be a general mechanism to ensure spatial and temporal coordination of replication with other chromosomal processes. Ninety-six samples total: 12 time points (each time points contains ChIP and input samples) from Rec114-myc ARS+, Rec114-myc ars∆ strains, Rec114-myc tof1∆ARS+ and Rec114-myc tof1∆ ars∆ strains

Sample Attributes
chip antibody
anti-Myc antibody (9E10), none
developmental stage
meiotic pophase
genotype
REC114-Myc ARS+, REC114-Myc ars∆, REC114-Myc tof1∆ ARS+, REC114-Myc tof1∆ ars∆
organism
Saccharomyces cerevisiae
time in meiosis
0 hr in meiosis, 2 hr in meiosis, 2.5 hr in meiosis, 3 hr in meiosis, 3.5 hr in meiosis, 4 hr in meiosis, 4.5 hr in meiosis, 5 hr in meiosis, 5.5 hr in meiosis, 6 hr in meiosis, 7 hr in meiosis, 8 hr in meiosis, time = 0 hr in meiosis, time = 1 hr in meiosis, time = 1.5 hr in meiosis, time = 2 hr in meiosis, time = 2.5 hr in meiosis, time = 3 hr in meiosis, time = 3.5 hr in meiosis, time = 4 hr in meiosis, time = 4.5 hr in meiosis, time = 5 hr in meiosis, time = 6 hr in meiosis, time = 7 hr in meiosis
Experiment Info
Accession
E-GEOD-52970
GEO ID
GSE52970, SRP033495
Type
ChIP-seq
Organism
Saccharomyces cerevisiae
Released
July 21, 2014
Updated
Sept. 6, 2014
Submitter
Bic MSKCC、 Hajime Murakami、 Scott Keeney
Analysis Services
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