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E-GEOD-60082 GSE60082 transcription profiling by array Homo sapiens

Effective sorafenib treatment response in a panel of genomically-characterized malignant peripheral nerve sheath tumor orthoxenograft models

·Released April 15, 2015 ·Updated April 17, 2015
12
Samples
12
Assays
1
Array Platforms
1
References
Description

Background: Malignant peripheral nerve sheath tumors (MPNST) are soft-tissue sarcomas that can arise either sporadically or in association with neurofibromatosis type 1 (NF1). These aggressive malignancies confer poor survival, with no effective therapy available. Methods: We generated five patient-derived MPNST orthoxenograft models (three NF1-related and two sporadic) and performed an exhaustive histological and molecular characterization of primary MPNSTs and their corresponding orthoxenografts. Finally, orthoxenografts models were used as an in vivo pre-clinical platform to test several treatment strategies. Results: MPNST orthoxenografts recapitulate the histopathological properties and preserve the genomic and transcriptomic status of their parental primary tumors. Additionally, they mimic distal dissemination properties in mice. Compatible with an origin in a catastrophic event and subsequent stabilization, MPNSTs contained highly altered genomes that remained remarkably stable in orthoxenograft establishment and along passages. Although preliminary, the results presented here point to clear differences between NF1-associated and sporadic MPNSTs. In accordance, mutation frequency in sporadic MPNSTs was an order of magnitude higher than in NF1-associated MPNSTs and unsupervised cluster analysis and principal component analysis (PCA) using a MPNST signature perfectly divided the samples between NF1 and sporadic MPNST. Finally, different therapeutic approaches tested in the validated orthoxenograft MPNST models, reveal that sorafenib, or in combination with doxorubicin or rapamycin caused a great tumor reduction in all models. Conclusion: The development of a well-characterized and standardized preclinical model for MPNSTs has laid the foundations for evaluating novel therapeutic strategies in the clinical setting. Moreover, results obtained strongly support the clinical evaluation of Sorafenib in this subset of patients. Primary MPNSTs were implanted in the sciatic nerve of nude mices to create orthoxenograft MPNST models. Several orthoxenograft passages were created. The primary tumor (when available) and passages 1 and 4 were selected for gene expression profiling to demonstrate that the orthoxenografts closely resemble their primary tumors and are stable along xenograft passages.

References
Comprehensive establishment and characterization of orthoxenograft mouse models of malignant peripheral nerve sheath tumors for personalized medicine.
Castellsagu� J, Gel B, Fern�ndez-Rodr�guez J, Llatj�s R, Blanco I, Benavente Y, P�rez-Sidelnikova D, Garc�a-Del Muro J, Vi�als JM, Vidal A, Vald�s-Mas R, Terribas E, L�pez-Doriga A, Pujana MA, Capell� G, Puente XS, Serra E, Villanueva A, L�zaro C
PMID: 25810463
Array Platforms
A-AFFY-141
Affymetrix GeneChip Human Gene 1.0 ST Array [HuGene-1_0-st-v1](12 items)
Sample Attributes
host organism
nude mouse
nf1-associated
No, Yes
organism
Homo sapiens
original tumor
NF_001, NF_002, S462, SP_001, SP_002
passage
1, 4, NA
sample type
cell line, orthoxenograft, primary tumor
Experiment Info
Accession
E-GEOD-60082
GEO ID
GSE60082
Type
transcription profiling by array
Organism
Homo sapiens
Released
April 15, 2015
Updated
April 17, 2015
Submitter
Ignacio Blanco、 Joan Castellsagué、 Diana Pérez-Sidelnikova、 Adriana López-Doriga、 Ernest Terribas、 Bernat Gel Moreno、 Xose S Puente、 Roger Llatjós、 Gabriel Capellá、 Yolanda Benavente、 Juana Fernández-Rodríguez、 Eduard Serra、 Joan MariaViñals、 Miguel A Pujana、 Rafael Valdés-Mas、 Javier García-del Muro、 Conxi Lázaro、 Bernat Gel、 Alberto Villanueva
Analysis Services
Analysis Services

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