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E-GEOD-60273 SRP045385, GSE60273 ChIP-seq Schizosaccharomyces pombe

Interaction between TBP and condensing drives the organization and faithful segregation of mitotic chromosomes

·Released Aug. 12, 2015 ·Updated Aug. 19, 2015
13
Samples
13
Assays
1
References
Description

Genome/chromosome organization is highly ordered and controls nuclear events. Here, we show that the TATA box-binding protein (TBP) interacts with the Cnd2 kleisin subunit of condensin to mediate interphase and mitotic chromosome organization in fission yeast. TBP recruits condensin onto RNA polymerase III-transcribed (Pol III) genes and highly transcribed Pol II genes; condensin in turn associates these genes with centromeres. Inhibition of the Cnd2-TBP interaction disrupts condensin localization across the genome and the proper assembly of mitotic chromosomes, leading to severe defects in chromosome segregation and eventually causing cellular lethality. We propose that the Cnd2-TBP interaction coordinates transcription with chromosomal architecture by linking dispersed gene loci with centromeres. This chromosome arrangement can contribute to the efficient transmission of physical force at the kinetochore to chromosomal arms, thereby supporting the fidelity of chromosome segregation. Genome-wide distributions of condensin and Pol III factors in fission yeast.

References
Interaction between TBP and Condensin Drives the Organization and Faithful Segregation of Mitotic Chromosomes.
Iwasaki O, Tanizawa H, Kim KD, Yokoyama Y, Corcoran CJ, Tanaka A, Skordalakes E, Showe LC, Noma KI
PMID: 26257282
Sample Attributes
chip antibody
mouse monoclonal anti-Flag M2 (Sigma, Cat. F3165, Lot. SLBH1191V), rabbit polyclonal anti-Myc (Novus Biologicals, Cat. NB600-336, Lot. A5)
culture condition
asynchronous cultures
genotype
h+N leu1-32 ade6-210 ura4-DS/E, h+N leu1-32 ade6-210 ura4-DS/E Cut14-13Myc::kanMX, h+N leu1-32 ade6-210 ura4-DS/E Sfc2-13Myc::kanMX, h+N leu1-32 ade6-210 ura4-DS/E Tbp1-13Myc::kanMX, h+N leu1-32 ade6-216 ura4-DS/E Sfc6-13Myc::kanMX, h- ade6-M26 ura4-D18 ade6::ade6+-Padh15-skp1-AtTIR1-2NLS-9myc::hphMX, nmt81-Cnd2-IAA17::kanMX + pcnd2-Cnd2C703R-3FLAG-Ura4-ars1-Leu2, h- ade6-M26 ura4-D18 ade6::ade6+-Padh15-skp1-AtTIR1-2NLS-9myc::hphMX, nmt81-Cnd2-IAA17::kanMX + pcnd2-Cnd2F701R-3FLAG-Ura4-ars1-Leu2, h- ade6-M26 ura4-D18 ade6::ade6+-Padh15-skp1-AtTIR1-2NLS-9myc::hphMX, nmt81-Cnd2-IAA17::kanMX + pcnd2-Cnd2wt-3FLAG-Ura4-ars1-Leu2, h- ade6-M26 ura4-D18 ade6::ade6+-Padh15-skp1-AtTIR1-2NLS-9myc::hphMX, nmt81-Cnd2-IAA17::kanMX + pRep4, mat1M leu1-32 ade6-210 his2 ura4-D18 Rpc25-13Myc::kanMX, mat1M leu1-32 ade6-216 his2 ura4-D18 Brf1-13Myc::kanMX
organism
Schizosaccharomyces pombe
strain/background
SPK1066, SPK1072, SPK425, SPK886, SPK971, SPO16, SPO195, SPO568, SPO569, SPO572, SPO573
tagged protein
Brf1-Myc, Cnd2 C703R-FLAG, Cnd2 F701R-FLAG, Cnd2 wt-FLAG, Cut14-Myc, no-tag FLAG, no-tag Myc, Rpc25-Myc, Sfc2-Myc, Sfc6-Myc, Tbp1-Myc
Experiment Info
Accession
E-GEOD-60273
GEO ID
SRP045385, GSE60273
Type
ChIP-seq
Organism
Schizosaccharomyces pombe
Released
Aug. 12, 2015
Updated
Aug. 19, 2015
Submitter
Hideki Tanizawa、 Iwasaki Osamu、 Noma Ken-ichi、 Tanizawa Hideki
Analysis Services
Analysis Services

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