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E-GEOD-62499 SRP049051, GSE62499 ChIP-seq Homo sapiens

PRC2 loss amplifies Ras-driven transcription and confers sensitivity to BRD4-based therapies [ChIP-seq]

·Released Oct. 21, 2014 ·Updated Oct. 25, 2014
6
Samples
6
Assays
1
References
Description

The polycomb repressive complex 2 (PRC2) exerts oncogenic effects in many tumour types1. However, loss-of-function mutations in PRC2 components occur in a subset of haematopoietic malignancies, suggesting that this complex plays a dichotomous and poorly understood role in cancer2,3. Here we provide genomic, cellular, and mouse mod- elling data demonstrating that the polycomb group gene SUZ12 func- tions as tumour suppressor in PNS tumours, high-grade gliomas and melanomas by cooperating with mutations in NF1. NF1 encodes a Ras GTPase-activating protein (RasGAP) and its loss drives cancer by activating Ras4. We show that SUZ12 loss potentiates the effects of NF1 mutations by amplifying Ras-driven transcription through effects on chromatin. Importantly, however, SUZ12 inactivation also triggers an epigenetic switch that sensitizes these cancers to bromodomain inhib- itors. Collectively, these studies not only reveal an unexpected con- nection between the PRC2 complex, NF1 and Ras, but also identify a promising epigenetic-based therapeutic strategy that may be exploited for a variety of cancers. 2x3 samples (DMSO and PDJQ treated; WCL, BRD4 and H3K27Ac pulldown)

References
PRC2 loss amplifies Ras-driven transcription and confers sensitivity to BRD4-based therapies.
De Raedt T, Beert E, Pasmant E, Luscan A, Brems H, Ortonne N, Helin K, Hornick JL, Mautner V, Kehrer-Sawatzki H, Clapp W, Bradner J, Vidaud M, Upadhyaya M, Legius E, Cichowski K
PMID: 25119042
Sample Attributes
cell line
MPNST cell line 90-8TL
chip antibody
BRD4, H3K27Ac, none
chip antibody cat. #
None, A301-085A, ab4729
chip antibody vendor
None, Abcam, Bethyl
organism
Homo sapiens
treated with
DMSO for 24hrs, PD-032901 (2uM) + JQ1 (100nM) for 24hrs
Experiment Info
Accession
E-GEOD-62499
GEO ID
SRP049051, GSE62499
Type
ChIP-seq
Organism
Homo sapiens
Released
Oct. 21, 2014
Updated
Oct. 25, 2014
Submitter
Thomas De Raedt
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