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E-GEOD-62500 GSE62500 transcription profiling by array Homo sapiens

Transcription profiling by array of human malignant peripheral nerve sheath tumour (MPNST) cell line 90-8TL with re-expressed SUZ12 or treated with bromodomain inhibitor JQ1

·Released Oct. 21, 2014 ·Updated April 30, 2015
9
Samples
9
Assays
1
Array Platforms
1
References
Description

The polycomb repressive complex 2 (PRC2) exerts oncogenic effects in many tumour types1. However, loss-of-function mutations in PRC2 components occur in a subset of haematopoietic malignancies, sug- gesting that this complex plays a dichotomous and poorly understood role in cancer2,3. Here we provide genomic, cellular, and mouse mod- elling data demonstrating that the polycomb group gene SUZ12 func- tions as tumour suppressor in PNS tumours, high-grade gliomas and melanomas by cooperating with mutations in NF1. NF1 encodes a Ras GTPase-activating protein (RasGAP) and its loss drives cancer by activating Ras4. We show that SUZ12 loss potentiates the effects of NF1 mutations by amplifying Ras-driven transcription through effects on chromatin. Importantly, however, SUZ12 inactivation also triggers an epigenetic switch that sensitizes these cancers to bromodomain inhib- itors. Collectively, these studies not only reveal an unexpected con- nection between the PRC2 complex, NF1 and Ras, but also identify a promising epigenetic-based therapeutic strategy that may be exploited for a variety of cancers. 9 samples in triplicates, 3x LacZ control, 3x SUZ12 over expression, 3x JQ1 treatment

References
PRC2 loss amplifies Ras-driven transcription and confers sensitivity to BRD4-based therapies.
De Raedt T, Beert E, Pasmant E, Luscan A, Brems H, Ortonne N, Helin K, Hornick JL, Mautner V, Kehrer-Sawatzki H, Clapp W, Bradner J, Vidaud M, Upadhyaya M, Legius E, Cichowski K
PMID: 25119042
Array Platforms
A-AFFY-141
Affymetrix GeneChip Human Gene 1.0 ST Array [HuGene-1_0-st-v1](9 items)
Sample Attributes
cell line
90-8TL
cell type
malignant peripheral nerve sheath tumour cell
genotype
NF1 region (incl. SUZ12) heterozygous microdeletion and Tyr430 mutation in SUZ12, NF1 region (incl. SUZ12) heterozygous microdeletion and Tyr430 mutation in SUZ12 with re-expressed SUZ12
organism
Homo sapiens
Experiment Info
Accession
E-GEOD-62500
GEO ID
GSE62500
Type
transcription profiling by array
Organism
Homo sapiens
Released
Oct. 21, 2014
Updated
April 30, 2015
Submitter
Karen Cichowski、 Thomas De Raedt、 Thomas De Raedt
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