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E-GEOD-70003 GSE70003 comparative genomic hybridization by ... Homo sapiens

Disseminated medulloblastoma in a child with germline BRCA2 6174delT mutation and without Fanconi anemia

·发布 2015年7月6日 ·更新 2015年8月20日
4
样本数
2
实验数
1
芯片平台
实验描述

We describe an 8 year old child who had disseminated anaplastic medulloblastoma and a deleterious heterozygous BRCA2 6174delT germline mutation. Molecular profiling was consistent with Group 4 medulloblastoma. The posterior fossa mass was resected and the patient received intensive chemotherapy and craniospinal irradiation. Despite this, the patient succumbed to a second recurrence of his medulloblastoma, which presented eight months after diagnosis as malignant pleural and peritoneal effusions. Continuous medulloblastoma cell lines were isolated from the original tumor (CHLA-01-MED) and the malignant pleural effusion (CHLA-01R-MED). Here we provide their analyses, including in vitro and in vivo growth, drug sensitivity, comparative genomic hybridization and next generation sequencing analysis. In addition to the BRCA2 6174delT, the medulloblastoma cells had amplification of MYC, deletion at Xp11.2 and isochromosome 17, but no structural variations or overexpression of GFI1 or GFI1B. To our knowledge, this is the first pair of diagnosis/recurrence medulloblastoma cell lines, the only medulloblastoma cell lines with BRCA2 6174delT described to date, and the first reported case of a child with medulloblastoma associated with a germline BRCA2 6174delT who did not also have Fanconi anemia. Continuous medulloblastoma cell lines were isolated from the original tumor (CHLA-01-MED) and the malignant pleural effusion (CHLA-01R-MED). Here we provide their analyses, including in vitro and in vivo growth, drug sensitivity, comparative genomic hybridization with Agilent 400k CGH arrays and whole transcriptome RNASeq analysis.

芯片平台
A-GEOD-19387
Agilent-021850 SurePrint G3 Human CGH Microarray (Probe Name version)(2 例)
样本属性
cell type
Pleural effusion therapy resistant, Primary medulloblastoma
genotype
heterozygous BRCA2 6174delT
organism
Homo sapiens
reference type
Normal female genome
sex
male
实验信息
登记号
E-GEOD-70003
GEO 编号
GSE70003
实验类型
comparative genomic hybridization by array
物种
Homo sapiens
发布日期
2015年7月6日
更新日期
2015年8月20日
提交者
Eric T Fung、 Floyd H Gilles、 Michael T Barrett、 Fergus J Couch、 Michael Thomas Barrett、 Jonathan L Finlay、 Jingying Xu、 Mark D Krieger、 Shahab Asgharzadeh、 Ashley Margol、 Meraj Aziz、 Anju Shukla、 Anat Erdreich-Epstein
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分析服务

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