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E-MTAB-4607 ERP014912 ChIP-seq Saccharomyces cerevisiae

Functional link between TFIIB and Mediator

Submitted March 22, 2016 ·Released Jan. 24, 2017 ·Updated Jan. 23, 2017
51
Samples
51
Assays
1
References
Description

In this study, we generate genomic maps of Mediator, Pol II, TBP, TFIIH, TFIIA, TFIIB, TFIIE, TFIIF, by ChIP coupled to next generation sequencing technology (ChIP-seq), in wild type strains from Saccharomyces cerevisiae and in a mutant for the Mediator essential subunit Med10

References
Functional interplay between Mediator and TFIIB in preinitiation complex assembly in relation to promoter architecture.
Eychenne T, Novikova E, Barrault MB, Alibert O, Boschiero C, Peixeiro N, Cornu D, Redeker V, Kuras L, Nicolas P, Werner M, Soutourina J.
PMID: 27688401
Sample Attributes
assay_name
A_INPUT-196-1, A_INPUT-196-2, A_INPUT-WT-1, A_INPUT-WT-2, A_INPUT-WT-3, A_KIN28-196-IP-1, A_KIN28-196-IP-2, A_KIN28-196-IP-3, A_KIN28-WT-IP-1, A_KIN28-WT-IP-2, A_KIN28-WT-IP-3, A_MED15-196-IP-1, A_MED15-196-IP-2, A_MED15-196-IP-3, A_MED15-WT-IP-1, A_MED15-WT-IP-2, A_MED15-WT-IP-3, A_MED17-196-IP, A_MED17-WT-IP, A_NT-WT-IP-1, A_NT-WT-IP-2, A_NT-WT-IP-3, A_POL2-196-IP-1, A_POL2-196-IP-2, A_POL2-196-IP-3, A_POL2-WT-IP-1, A_POL2-WT-IP-2, A_POL2-WT-IP-3, A_RAD3-196-IP-1, A_RAD3-196-IP-2, A_RAD3-196-IP-3, A_RAD3-WT-IP-1, A_RAD3-WT-IP-2, A_RAD3-WT-IP-3, A_TAF1-196-IP, A_TAF1-WT-IP, A_TBP-196-IP-1, A_TBP-196-IP-2, A_TBP-196-IP-3, A_TBP-WT-IP-1, A_TBP-WT-IP-2, A_TBP-WT-IP-3, A_TFA2-196-IP, A_TFA2-WT-IP, A_TFG1-196-IP, A_TFG1-WT-IP, A_TFIIB-196-IP, A_TFIIB-WT-IP, A_TOA2-196-IP, A_TOA2-WT-IP
genetic modification
tagging, wild type
genotype
MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 KIN28::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 KIN28::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 LEU2::3HA::SPT15 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 LEU2::3HA::SPT15 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 MED15::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 MED15::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 MED17::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 MED17::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 RAD3::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 RAD3::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 SUA7::TAP::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 SUA7::TAP::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TAF1::3HA::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TAF1::3HA::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TFA2::TAP::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TFA2::TAP::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TFG1::TAP::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TFG1::TAP::HIS3 med10::KanMX6 // med10-196 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TOA2::TAP::HIS3 med10::KanMX6 // MED10 CEN TRP1, MATa ura3-52 his3-D200 ade2-101uaa trp1-D63 lys2-801uag leu2-D1 TOA2::TAP::HIS3 med10::KanMX6 // med10-196 CEN TRP1
organism
Saccharomyces cerevisiae
Experiment Info
Accession
E-MTAB-4607
GEO ID
ERP014912
Type
ChIP-seq
Organism
Saccharomyces cerevisiae
Submitted
March 22, 2016
Released
Jan. 24, 2017
Updated
Jan. 23, 2017
Submitter
Werner Michel、 Soutourina Julie、 Alibert Olivier、 Eychenne Thomas
Analysis Services
Analysis Services

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