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E-MTAB-7490 methylation profiling by array Homo sapiens

Methylation profiling of adult astroblastoma

Submitted Nov. 6, 2017 ·Released March 22, 2019 ·Updated Dec. 6, 2018
6
Samples
12
Assays
1
Array Platforms
Description

Aims and methods: astroblastoma is a rare glial brain tumor with singular morphology. Recurrent MN1-BEND2 fusions have been recently identified in most of pediatric cases. Adolescent and adult cases, however, remain molecularly poorly defined. Here, we performed clinical and molecular characterization of a retrospective cohort of 14 adult and one adolescent gliomas with astroblastic features. Results: strikingly, we found MN1 fusions a rare event in this age group (1/15). Using methylation profiling and targeted sequencing, most cases were reclassified as either pleomorphic xanthoastrocytomas (PXA) or high-grade glioma (HGG). PXA-like ABM show BRAF mutation (6/7 with V600E mutation and 1/7 with G466E mutation) and CD34 expression. Conversely, HGG-like ABM harbored specific mutations of diffuse midline glioma (2/5) or glioblastoma (3/5). These latter patients showed an unfavorable clinical course with significantly shorter overall survival (p = 0.027). MAPK pathway alterations (including FGFR fusion, BRAF and NF1 mutations) were present in 10 of 15 patients and overrepresented in the HGG group (3/5) compared to previously reported prevalence of these alterations in GBM and diffuse midline glioma. Conclusion: We suggest that astroblastoma comprises a variety of molecularly sharply defined entities. Adults’ astroblastomas harboring molecular features of PXA and HGG should be reclassified. CNS high-grade neuroepithelial tumors with MN1 alterations appears to be a truly pediatric entity and is uncommon in adult cases with a histology of astroblastoma. Astroblastic morphology in adults should thus prompt thorough molecular investigation aiming at a clear histomolecular diagnosis and identifying actionable drug targets, especially in MAPK pathway.

Array Platforms
A-GEOD-21145
Infinium MethylationEPIC(12 items)
Sample Attributes
age
15 year, 18 year, 23 year, 66 year, 67 year, 76 year
developmental stage
adult
disease
brain neoplasm
individual
2319T, 2672T, 3877T, 5873T, 7379T, 7937T
organism
Homo sapiens
organism part
brain
sampling site
neoplasm
sex
female, male
Experiment Info
Accession
E-MTAB-7490
Type
methylation profiling by array
Organism
Homo sapiens
Submitted
Nov. 6, 2017
Released
March 22, 2019
Updated
Dec. 6, 2018
Submitter
Philipp Euskirchen
External Links
ArrayExpress source
Analysis Services
Analysis Services

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