PMS2P1 (PMS1 homolog 2, mismatch repair system component pseudogene 1)

symbol:
PMS2P1
locus group:
pseudogene
location:
7q22.1
gene_family:
alias symbol:
PMS3|PMS8|PMS2L13|PMSR2|PMSR1
alias name:
None
entrez id:
5379
ensembl gene id:
ENSG00000078319
ucsc gene id:
None
refseq accession:
NR_003613
hgnc_id:
HGNC:9123
approved reserved:
1997-08-15
7q22.1

PMS2P1(Postmeiotic Segregation Increased 2 Pseudogene 1)是一个假基因,属于PMS2基因家族。假基因通常不编码功能性蛋白质,因为它们含有突变或缺失,导致无法正常转录或翻译。PMS2P1与PMS2基因高度相似,PMS2是DNA错配修复(MMR)系统的关键成员,负责纠正DNA复制过程中产生的错误,维持基因组稳定性。PMS2基因家族的共性在于它们参与DNA修复,特别是错配修复,这对防止突变积累和癌症发生至关重要。PMS2P1作为假基因,可能通过基因调控或转录干扰影响PMS2或其他相关基因的表达。尽管PMS2P1本身不编码功能性蛋白,但其序列可能与PMS2或其他MMR基因竞争结合调控因子,从而间接影响DNA修复功能。PMS2P1的突变或表达变化通常不会直接影响机体,但可能通过干扰PMS2的功能间接影响DNA修复效率,增加基因组不稳定性,进而可能与癌症风险相关。PMS2基因的缺陷已明确与林奇综合征(遗传性非息肉病性结直肠癌)相关,但PMS2P1的作用尚不明确。如果PMS2P1过表达,可能通过竞争性结合转录或翻译调控因子,干扰PMS2的正常功能,导致DNA修复缺陷,增加突变积累和癌症风险。相反,降低PMS2P1表达可能减少对PMS2的干扰,但具体影响仍需进一步研究。目前关于PMS2P1的研究较少,其生物学意义尚不完全清楚,但假基因在进化、基因调控和疾病中的作用正逐渐受到关注。

Nucleotide sequence of PMS2P1:[NCBI]
Loading Gene Browser...
Protein Sequence
1MVTMCGGHRP ENFLHQVLTE FGEELAGEGK SEVGGGAPRS
41YLQVASAECW AAAPAVHVGE PVHAGGLHTE RGADPVIGLY
81 LVHRGGACQ TPTVGNRQTP TLGIHARPRR RATTSLLTLL
121LAFGKNAVRC ALIGPGSLTS RTRPLTEPLG EKERREVFFP
161P RPERVEHN VESSRWEPRR RGACGSRGGN FPSPRGGSGV
201ASLERAESSS TEPAKAIKPI DRKSVHQICS GPVVPSLSTA
241VK ELVENSL DAGATNIDLK LKDYGVDLIE VSGNGCGVEE
281ENFEGLTLKH HTSKIQEFAD LPQVETFGFR GEALSSLCAL
321SDV TISTCH VSAKVGTRLV FDHYGKIIQK TPYPHPRGMT
361VSVKQLFSTL PVHHKEFQRN IKKKRACFPF AFCRDCQFPE
401ASPA MLPVQ PAELTPRSTP PHPCSLEDNV ITVFSSVKNG
441PGSSR
Structure predicted by AlphaFold DB(UniProt: A4D2B8). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of PMS2P1:           Showing partial SNPs
rs858639       rs1054327       rs1054330       rs1059119       rs1059126       rs1059129       rs1063945       rs1063946       rs1812040       rs1819797       rs1819799       rs2020376       rs2020378       rs2405470       rs3194860       rs3194861       rs3200614      

Tissue expression of PMS2P1:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
CTTTGTGCACTGAGGACTC
59
AGAGCTGAATACAGTGATCAC
58
GGAGGGAACTTTCCCAGTC
60
AGCAGGTTCTGTACTCGAG
59
GAGTGGATCTCATTGAAGTTTCAG
60
TGTGATGTTTCAGAGTTAAGCC
59

Subcellular localization of PMS2P1 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for PMS2P1:

GO ID
Protein
Source DB
GO:0003697
A4D2B8 (UniProtKB)
IBA
GO:0006298
A4D2B8 (UniProtKB)
IBA
GO:0016301
A4D2B8 (UniProtKB)
IEA
GO:0016310
A4D2B8 (UniProtKB)
IEA
GO:0016446
A4D2B8 (UniProtKB)
IBA
GO:0016887
A4D2B8 (UniProtKB)
IBA
GO:0032389
A4D2B8 (UniProtKB)
IBA

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