TAF13 (TATA-box binding protein associated factor 13)

symbol
TAF13
locus group
protein-coding gene
location
1p13.3
gene_family
-
alias symbol
TAFII18
alias name
Transcription initiation factor TF…
entrez id
6884
ensembl gene id
ENSG00000197780
ucsc gene id
uc001dwm.2
refseq accession
NM_005645
hgnc_id
HGNC:11546
approved reserved
1995-07-13
1p13.3
ChineseEnglish

TAF13 (TATA-box binding protein associated factor 13) is a critical nuclear component of the TFIID transcription factor complex, a multi-subunit assembly essential for the initiation of eukaryotic gene transcription by RNA polymerase II. As a member of the TAF gene family, TAF13 possesses conserved histone fold domains that facilitate specific protein-protein interactions, most notably its formation of a stable heterodimer with TAF11. This dimeric structure is pivotal for maintaining the structural integrity of the TFIID complex, which recognizes and binds to the TATA box—a specific DNA sequence within promoter regions—to recruit RNA polymerase II and other general transcription factors, thereby establishing the pre-initiation complex. By stabilizing TFIID, TAF13 ensures precise positioning of the transcription machinery and regulates the transcriptional activity of specific gene sets. Disruption of TAF13 function, whether through mutation or aberrant expression, can impair TFIID assembly and DNA binding, leading to widespread dysregulation of global gene expression. Such disturbances have been linked to various pathological conditions, including developmental disorders and cancers; for instance, overexpression of TAF13 has been observed in small cell lung cancer, where it may promote tumor cell proliferation by altering the balance of transcriptional activation and repression. Conversely, reduced TAF13 expression can compromise transcription initiation efficiency, affecting fundamental cellular processes such as growth and differentiation. Given its central role in basal transcriptional machinery and its high evolutionary conservation, TAF13 is a key regulator of cellular homeostasis, although the precise mechanistic details of its involvement in specific disease pathologies remain an active area of research.

Nucleotide sequence of TAF13:[NCBI]
Loading Gene Browser...
Protein Sequence
1MADEEEDPTF EEENEEIGGG AEGGQGKRKR LFSKELRCMM
41YGFGDDQNPY TESVDILEDL VIEFITEMTH KAMSIGRQGR
81 VQVEDIVFL IRKDPRKFAR VKDLLTMNEE LKRARKAFDE
121ANYGS
Structure predicted by AlphaFold DB(UniProt: Q15543). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of TAF13:           Showing partial SNPs
rs139886574       rs142103732       rs146345412       rs185188055       rs373297673       rs561096       rs673365       rs1149166       rs1562225       rs2358956       rs2358957       rs3217403       rs4520441       rs6604760       rs7412176       rs7511817       rs7554144      

Tissue expression of TAF13:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
CTGAAATGACTCACAAGGCA
59
CCTTTCGAATCAAGAAGACGA
59
CTGAAATGACTCACAAGGCA
59
CCTTTCGAATCAAGAAGACGA
59
TGACCAGAATCCTTATACTGAGTC
60
GCCTTGTGAGTCATTTCAGTG
60
TGACCAGAATCCTTATACTGAGTC
60
GCCTTGTGAGTCATTTCAGTG
60
GACCAGAATCCTTATACTGAGTC
58
TGCCTTGTGAGTCATTTCAG
59
GACCAGAATCCTTATACTGAGTC
58
TGCCTTGTGAGTCATTTCAG
59

Subcellular localization of TAF13 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for TAF13:

GO ID
Protein
Source DB
GO:0003677
Q15543 (UniProtKB)
IBA
GO:0003700
Q15543 (UniProtKB)
NAS
GO:0003712
Q15543 (UniProtKB)
IBA
GO:0005515
Q15543 (UniProtKB)
IPI
GO:0005515
Q15543 (UniProtKB)
IPI
GO:0005515
Q15543 (UniProtKB)
IPI
GO:0005515
Q15543 (UniProtKB)
IPI
GO:0005515
Q15543 (UniProtKB)
IPI
GO:0005634
Q15543 (UniProtKB)
IDA
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005654
Q15543 (UniProtKB)
TAS
GO:0005669
Q15543 (UniProtKB)
IDA
GO:0005669
Q15543 (UniProtKB)
NAS
GO:0005730
Q15543 (UniProtKB)
IDA
GO:0006352
Q15543 (UniProtKB)
NAS
GO:0006357
Q15543 (UniProtKB)
IBA
GO:0006366
Q15543 (UniProtKB)
IC
GO:0006366
Q15543 (UniProtKB)
TAS
GO:0006367
Q15543 (UniProtKB)
IC
GO:0006367
Q15543 (UniProtKB)
TAS
GO:0006367
Q15543 (UniProtKB)
TAS
GO:0006368
Q15543 (UniProtKB)
TAS
GO:0008022
Q15543 (UniProtKB)
IPI
GO:0042795
Q15543 (UniProtKB)
TAS
GO:0046982
Q15543 (UniProtKB)
IEA
GO:1901796
Q15543 (UniProtKB)
TAS
String
BioGrid
IntAct
mentha
Reactome
Loading…
Interacting Gene Interaction Source/Score
Two New Families With TAF13 Variant Presenting With Syndromic 46,XY Disorder of Sex Development: Expanding the Clinical Phenotype.
Arı H, Türkyılmaz A, Doğan Arı AB, Kardeş H, Sezer A, Cimbek EA, Savaş Erdeve Ş, Karagüzel G Am J Med Genet A IF: 1.7 2025-12-00
Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets.
Fazlollahi Mina, Muroff Ivor, Lee Eunjee, Causton Helen C, Bussemaker Harmen J Proc Natl Acad Sci U S A IF: 9.5 2016-09-01
Cloning and bioinformatic analysis of full-length novel pepper (Capsicum annuum) genes TAF10 and TAF13.
Wen J F, Huo J L, Chen H X, Ma C H, Jiang H, Zhu H S, Zhou H, Deng M H Genet Mol Res IF: 0.764 2014-09-02
TAF13 interacts with PRC2 members and is essential for Arabidopsis seed development.
Lindner Matias, Simonini Sara, Kooiker Maarten, Gagliardini Valeria, Somssich Marc, Hohenstatt Mareike, Simon Rüdiger, Grossniklaus Ueli, Kater Martin M Dev Biol IF: 2.1 2013-07-29
Involvement of GTA protein NC2beta in neuroblastoma pathogenesis suggests that it physiologically participates in the regulation of cell proliferation.
Di Pietro Cinzia, Ragusa Marco, Barbagallo Davide, Duro Laura R, Guglielmino Maria R, Majorana Alessandra, Giunta Veronica, Rapisarda Antonella, Tricarichi Elisa, Miceli Marco, Angelica Rosario, Grillo Agata, Banelli Barbara, Defferari Isabella, Forte Stefano, Laganà Alessandro, Bosco Camillo, Giugno Rosalba, Pulvirenti Alfredo, Ferro Alfredo, Grzeschik Karl H, Di Cataldo Andrea, Tonini Gian P, Romani Massimo, Purrello Michele Mol Cancer IF: 6.204 2008-08-13
A common cis-element in promoters of protein synthesis and cell cycle genes.
Wyrwicz Lucjan S, Gaj Paweł, Hoffmann Marcin, Rychlewski Leszek, Ostrowski Jerzy Acta Biochim Pol IF: 1.4 2007-10-15
Systematic analysis of essential yeast TAFs in genome-wide transcription and preinitiation complex assembly.
Shen Wu-Cheng, Bhaumik Sukesh R, Causton Helen C, Simon Itamar, Zhu Xiaochun, Jennings Ezra G, Wang Tseng-Hsing, Young Richard A, Green Michael R EMBO J IF: 8.4 2003-08-12
CD36 antisense expression in 3T3-F442A preadipocytes.
Sfeir Z, Ibrahimi A, Amri E, Grimaldi P, Abumrad N Mol Cell Biochem IF: 4.7 1999-07-26

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