TAF1A (TATA-box binding protein associated factor, RNA polymerase I subunit A)

symbol:
TAF1A
locus group:
protein-coding gene
location:
1q41
gene_family:
alias symbol:
TAFI48|SL1
alias name:
None
entrez id:
9015
ensembl gene id:
ENSG00000143498
ucsc gene id:
uc009xdz.2
refseq accession:
NM_005681
hgnc_id:
HGNC:11532
approved reserved:
1999-01-18
1q41

TAF1A(TATA-box binding protein associated factor 1A)是RNA聚合酶II转录起始复合物TFIID的一个亚基,属于TAF(TATA-box binding protein-associated factors)基因家族。TAF家族成员是转录起始复合物的核心组成部分,通过与TBP(TATA-box binding protein)结合,协助RNA聚合酶II识别启动子并启动基因转录。TAF1A在核糖体RNA(rRNA)的转录中起关键作用,特别是在RNA聚合酶I介导的rRNA合成过程中,它参与调控核糖体生物发生,影响细胞生长和增殖。TAF1A的主要作用位点是核仁(nucleolus),这是细胞核内负责rRNA合成和加工的区域。TAF1A突变可能导致其功能异常,影响rRNA的转录效率,进而干扰核糖体组装和蛋白质合成,最终导致细胞增殖受阻或凋亡。研究表明,TAF1A的异常表达与某些癌症(如肝癌、乳腺癌)的发生发展相关,其过表达可能促进肿瘤细胞增殖,而降低表达则可能抑制肿瘤生长。此外,TAF1A还参与细胞周期调控,影响G1/S期转换。TAF家族成员的共性是它们均与TBP结合形成TFIID复合物,协助转录起始,并在不同RNA聚合酶(I、II、III)的转录过程中发挥作用。TAF1A过表达可能增强rRNA合成,促进细胞增殖,但也可能导致核糖体应激(ribosome stress)和基因组不稳定性;而降低表达则可能抑制rRNA生成,减缓细胞生长,甚至引发细胞周期停滞。TAF1A的功能异常还可能影响其他依赖核糖体功能的基因表达,如参与代谢、DNA修复和信号转导的基因。

ChineseEnglish

This gene encodes a subunit of the RNA polymerase I complex, Selectivity Factor I (SLI). The encoded protein is a TATA box-binding protein-associated factor that plays a role in the assembly of the RNA polymerase I preinitiation complex. Alternate splicing results in multiple transcript variants encoding multiple isoforms.[provided by RefSeq, Jan 2011]

Nucleotide sequence of TAF1A:[NCBI]
Loading Gene Browser...
Protein Sequence
1MSDFSEELKG PVTDDEEVET SVLSGAGMHF PWLQTYVETV
41AIGGKRRKDF AQTTSACLSF IQEALLKHQW QQAAEYMYSY
81 FQTLEDSDS YKRQAAPEII WKLGSEILFY HPKSNMESFN
121TFANRMKNIG VMNYLKISLQ HALYLLHHGM LKDAKRNLSE
161A ETWRHGEN TSSREILINL IQAYKGLLQY YTWSEKKMEL
201SKLDKDDYAY NAVAQDVFNH SWKTSANISA LIKIPGVWDP
241FV KSYVEML EFYGDRDGAQ EVLTNYAYDE KFPSNPNAHI
281YLYNFLKRQK APRSKLISVL KILYQIVPSH KLMLEFHTLL
321RKS EKEEHR KLGLEVLFGV LDFAGCTKNI TAWKYLAKYL
361KNILMGNHLA WVQEEWNSRK NWWPGFHFSY FWAKSDWKED
401TALA CEKAF VAGLLLGKGC RYFRYILKQD HQILGKKIKR
441MKRSVKKYSI VNPRL
结构预测来自 AlphaFold DB(UniProt: Q15573),颜色表示 pLDDT 置信度(深蓝高、黄橙低)。
SNP variants of TAF1A:           Showing partial SNPs
rs1024065       rs2006790       rs2270705       rs2936027       rs2936040       rs2936041       rs3008649       rs3008650       rs3008651       rs3008652       rs3008653       rs3028308       rs4525045       rs4846767       rs5019418       rs11458574       rs17464836      

Tissue expression of TAF1A:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
AAGCTGCAGAATACATGTACAG
59
GCAGAAATTACTCAGGTGCAG
60
AGTGTGCTTAAGCATCTACAG
58
CATACATGGAGATGGCAGC
59
CTTAATGGGAAACCACCTTGC
60
GTAGCTGAAATGAAAGCCTGG
60
AAGCTGCAGAATACATGTACAG
59
TCCAAATAATCTCAGGTGCAG
58
AAGCTGCAGAATACATGTACAG
59
TCCAAATAATCTCAGGTGCAG
58
AGAAACTGTGGCCATTGGA
60
TTCAGCAGAGCTTCTTGGA
59
AAGCTGCAGAATACATGTACAG
59
TAAGGAGATCTCAGGTGCAG
59
AAGCTGCAGAATACATGTACAG
59
ACTCTCCATGTTGCTCAGG
59
GTAGAAATGCTGGAATTCTATGGG
60
TTCTGTAGATGCTTAAGCACAC
59
TTAATGGGAAACCACCTTGC
59
AGTAGCTGAAATGAAAGCCTG
59
Transcription Factors
Target Gene
Interaction Type
PubMed References
NPM1
TAF1A
Activation

Subcellular localization of TAF1A (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for TAF1A:

GO ID
Protein
Source DB
GO:0000120
Q15573 (UniProtKB)
IBA
GO:0003677
Q15573 (UniProtKB)
IEA
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005515
Q15573 (UniProtKB)
IPI
GO:0005634
Q15573 (UniProtKB)
IDA
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0005654
Q15573 (UniProtKB)
TAS
GO:0006355
Q15573 (UniProtKB)
IEA
GO:0006360
Q15573 (UniProtKB)
TAS
GO:0006361
Q15573 (UniProtKB)
TAS
GO:0006361
Q15573 (UniProtKB)
TAS
GO:0006362
Q15573 (UniProtKB)
TAS
GO:0006363
Q15573 (UniProtKB)
TAS
GO:0006366
Q15573 (UniProtKB)
TAS
GO:0015630
Q15573 (UniProtKB)
IDA
GO:0043231
Q15573 (UniProtKB)
IDA
GO:0045815
Q15573 (UniProtKB)
TAS

microRNAs potentially regulating TAF1A:     

String
BioGrid
IntAct
mentha
MINT
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
Transcriptional profiling of genes at the human common fragile site FRA1H in tumor-derived cell lines.
Pelliccia Franca, Curatolo Angela, Limongi Zaira M, Bosco Nazario, Rocchi Angela Cancer Genet Cytogenet IF: 0.000 2007-12-06
Global functional analysis of nucleophosmin in Taxol response, cancer, chromatin regulation, and ribosomal DNA transcription.
Bergstralh Daniel T, Conti Brian J, Moore Chris B, Brickey W June, Taxman Debra J, Ting Jenny P-Y Exp Cell Res IF: 3.5 2007-02-09
Genomic localization of the human genes TAF1A, TAF1B and TAF1C, encoding TAF(I)48, TAF(I)63 and TAF(I)110 subunits of class I general transcription initiation factor SL1.
Di Pietro C, Rapisarda A, Amico V, Bonaiuto C, Viola A, Scalia M, Motta S, Amato A, Engel H, Messina A, Sichel G, Grzeschik K, Purrello M Cytogenet Cell Genet 2000-08-09
Detection of genes associated with developmental competence of bovine oocytes.
Nemcova Lucie, Jansova Denisa, Vodickova-Kepkova Katerina, Vodicka Petr, Jeseta Michal, Machatkova Marie, Kanka Jiri Anim Reprod Sci IF: 2.6 0000-00-00
Novel phenotypes and loci identified through clinical genomics approaches to pediatric cataract.
Patel Nisha, Anand Deepti, Monies Dorota, Maddirevula Sateesh, Khan Arif O, Algoufi Talal, Alowain Mohammed, Faqeih Eissa, Alshammari Muneera, Qudair Ahmed, Alsharif Hadeel, Aljubran Fatimah, Alsaif Hessa S, Ibrahim Niema, Abdulwahab Firdous M, Hashem Mais, Alsedairy Haifa, Aldahmesh Mohammed A, Lachke Salil A, Alkuraya Fowzan S Hum Genet IF: 3.4 0000-00-00

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