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PMID: 40596187 Published · epublish English Journal Article

Machine learning unveils hypoxia-immune gene hub for clinical stratification of thyroid-associated ophthalmopathy.

Scientific reports ·Vol. 15 ·No. 1 ·2025-07-01 ·页码 22021

Chen L, Wang S, Wang J, Xu B, Tan J, Xia X

Abstract

Thyroid-associated ophthalmopathy (TAO) is an autoimmune disorder affecting the orbit, potentially resulting in blindness. This study focused on the role of hypoxia in its pathogenesis through integrative bioinformatics and experimental validation. Five differentially expressed genes associated with hypoxia (HRDEGs) were identified via Gene Expression Omnibus (GEO) database mining: AGO2, CP, DIO3, PSMD14, WTIP. qPCR and immunohistochemistry confirmed reduced expressions of AGO2 and PSMD14, and elevated expression of DIO3 in TAO orbital tissues. Hypoxia exposure aggravated the above dysregulation and promoted proliferation and adipogenesis of orbital fibroblasts. A predictive model was developed using four machine learning algorithms and validated for its effectiveness in diagnosing TAO and assessing disease severity. Functional enrichment revealed hypoxia response, apoptosis, and programmed cell death. Protein-protein interaction and mRNA interaction networks of HRDEGs were established, predicting transcription factors, microRNAs, RNA-binding proteins, and drugs interacting with them. Immune infiltration analysis demonstrated the accumulation of Type 17 T helper cells and CD56 dim natural killer cells in high-risk patients, correlating with DIO3 upregulation and AGO2 downregulation. Flow cytometry confirmed the enrichment of these two cell types in the orbital tissue of TAO. This study revealed hypoxia-immunity crosstalk in TAO pathogenesis, providing a validated predictive model and molecular targets for precision interventions.

Keywords
Hypoxia Immune microenvironment Predictive model Thyroid-associated ophthalmopathy
MeSH 主题词
Humans Graves Ophthalmopathy/genetics,immunology,diagnosis,pathology,metabolism Machine Learning Hypoxia/genetics,immunology Computational Biology/methods Protein Interaction Maps Gene Regulatory Networks Fibroblasts/metabolism Gene Expression Regulation
作者与单位
共 6 位作者,点击展开单位 / ORCID
Chen Lu
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China. | Hunan Provincial Key Laboratory of Micro & Nano Materials Interface Science, College of Chemistry and Chemical Engineering, Central South University, No. 932 Lushan Road South, Changsha, 410083, Hunan, People's Republic of China.
Wang Sha
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China.
Wang Jinwei
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China.
Xu Bei
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China.
Tan Jia
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. tanjiaxy@csu.edu.cn. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. tanjiaxy@csu.edu.cn. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. tanjiaxy@csu.edu.cn. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China. tanjiaxy@csu.edu.cn.
Xia Xiaobo
Eye Center of Xiangya Hospital, Central South University, Changsha, 410008, Hunan, People's Republic of China. xbxia21@csu.edu.cn. | Hunan Key Laboratory of Ophthalmology, Changsha, 410008, Hunan, People's Republic of China. xbxia21@csu.edu.cn. | National clinical key specialty of ophthalmology, Changsha, 410008, Hunan, People's Republic of China. xbxia21@csu.edu.cn. | National Clinical Research Center for Geriatric Diseases (Xiangya Hospital), Central South University, Changsha, 410008, Hunan, People's Republic of China. xbxia21@csu.edu.cn.
Article Info
Journal
Scientific reports
Abbr.
Sci Rep
ISSN
2045-2322
Published
2025-07-01
电子出版
2025-00-01
页码
22021
Language
English
Country/Region
England
NLM ID
101563288
基金资助
Natural Science Foundation of Hunan Province · 2024JJ6699
Natural Science Foundation of Hunan Province · 2022JJ30964
Natural Science Foundation of Hunan Province · 2022JJ30959
National Natural Science Foundation of China · No. 82371105
National Key Research and Development Program of China · 2024YFA1108704
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