TAF2 (TATA-box binding protein associated factor 2)

symbol
TAF2
locus group
protein-coding gene
location
8q24.12
gene_family
-
alias symbol
TAFII150|CIF150
alias name
None
entrez id
6873
ensembl gene id
ENSG00000064313
ucsc gene id
uc003you.4
refseq accession
NM_003184
hgnc_id
HGNC:11536
approved reserved
1995-07-07
8q24.12
ChineseEnglish

TAF2, also known as TATA-box binding protein associated factor 2, is a critical subunit of the transcription factor IID (TFIID) complex, a multi-protein assembly essential for the initiation of eukaryotic transcription by RNA polymerase II. As a member of the TAF gene family, TAF2 contributes to the recognition of core promoter elements, particularly the TATA box, by serving as a structural bridge within the TFIID complex; its N-terminal domain directly binds to the TATA-box binding protein (TBP), while its C-terminal region interacts with other TAF subunits to stabilize the overall architecture of the complex. This precise assembly enables the recruitment of RNA polymerase II to specific genomic loci, thereby regulating the transcription of genes involved in cell cycle control, differentiation, and developmental processes. TAF2 is predominantly localized in the nucleus, where it exerts its function through conserved histone fold domains that mediate protein-protein interactions, facilitating chromatin remodeling and epigenetic regulation. Disruption of TAF2 function, such as through loss-of-function mutations including missense or truncation variants, can impair TFIID assembly and global transcriptional regulation, leading to severe phenotypic consequences such as embryonic developmental defects and aberrant cell proliferation. Conversely, dysregulated TAF2 expression has significant implications for disease pathology; overexpression may aberrantly activate downstream pro-proliferative genes, including cyclins, thereby promoting tumorigenesis, while reduced expression can suppress essential transcriptional programs, compromising cell survival. Recent studies have linked TAF2 mutations to various cancers, notably colorectal cancer, as well as neurodevelopmental disorders, underscoring its vital role in maintaining genomic stability and proper cellular homeostasis within the broader transcriptional regulatory network.

Nucleotide sequence of TAF2:[NCBI]
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Protein Sequence
1MPLTGVEPAR MNRKKGDKGF ESPRPYKLTH QVVCINNINF
41QRKSVVGFVE LTIFPTVANL NRIKLNSKQC RIYRVRINDL
81 EAAFIYNDP TLEVCHSESK QRNLNYFSNA YAAAVSAVDP
121DAGNGELCIK VPSELWKHVD ELKVLKIHIN FSLDQPKGGL
161H FVVPSVEG SMAERGAHVF SCGYQNSTRF WFPCVDSYSE
201LCTWKLEFTV DAAMVAVSNG DLVETVYTHD MRKKTFHYML
241TI PTAASNI SLAIGPFEIL VDPYMHEVTH FCLPQLLPLL
281KHTTSYLHEV FEFYEEILTC RYPYSCFKTV FIDEAYVEVA
321AYA SMSIFS TNLLHSAMII DETPLTRRCL AQSLAQQFFG
361CFISRMSWSD EWVLKGISGY IYGLWMKKTF GVNEYRHWIK
401EELD KIVAY ELKTGGVLLH PIFGGGKEKD NPASHLHFSI
441KHPHTLSWEY YSMFQCKAHL VMRLIENRIS MEFMLQVFNK
481LLSLA STAS SQKFQSHMWS QMLVSTSGFL KSISNVSGKD
521IQPLIKQWVD QSGVVKFYGS FAFNRKRNVL ELEIKQDYTS
561PGTQKY VGP LKVTVQELDG SFNHTLQIEE NSLKHDIPCH
601SKSRRNKKKK IPLMNGEEVD MDLSAMDADS PLLWIRIDPD
641MSVLRKV EF EQADFMWQYQ LRYERDVVAQ QESILALEKF
681PTPASRLALT DILEQEQCFY RVRMSACFCL AKIANSMVST
721WTGPPAMK S LFTRMFCCKS CPNIVKTNNF MSFQSYFLQK
761TMPVAMALLR DVHNLCPKEV LTFILDLIKY NDNRKNKFSD
801NYYRAEMID ALANSVTPAV SVNNEVRTLD NLNPDVRLIL
841EEITRFLNME KLLPSYRHTI TVSCLRAIRV LQKNGHVPSD
881PALFKSYAEY GHFVDIRIA ALEAVVDYTK VDRSYEELQW
921LLNMIQNDPV PYVRHKILNM LTKNPPFTKN MESPLCNEAL
961VDQLWKLMNS G TSHDWRLR CGAVDLYFTL FGLSRPSCLP
1001LPELGLVLNL KEKKAVLNPT IIPESVAGNQ EAANNPSSHP
1041QLVGFQNPFS SS QDEEEID MDTVHDSQAF ISHHLNMLER
1081PSTPGLSKYR PASSRSALIP QHSAGCDSTP TTKPQWSLEL
1121ARKGTGKEQA PLE MSMHPA ASAPLSVFTK ESTASKHSDH
1161HHHHHHEHKK KKKKHKHKHK HKHKHDSKEK DKEPFTFSSP
1201ASGRSIRSPS LSD
Structure predicted by AlphaFold DB(UniProt: Q6P1X5). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of TAF2:           Showing partial SNPs
rs14027       rs1055133       rs3195615       rs6988621       rs6992109       rs7823818       rs72690115       rs76147777       rs143489391       rs146462356       rs149852644       rs181096466       rs183823517       rs186692755       rs191518174       rs374727697       rs530646061      

Tissue expression of TAF2:    [UniProt]

Gene expression across tissues
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
GATAGCAGCTTTGGAAGCAG
59
GAGAATCTTATGCCTTACATAGGG
58
GTGTAAAGCCCACCTTGTG
59
AGTACTAGCCAGACTTAGCAG
58
TACCATCACTGTCAGGCTG
59
AGGAGAATCACTGGAACCC
58
CCCAAGGCCATATAAATTAACCC
59
CTAACTGCAGCTGCATAAGC
59
CAGTGGGTAGATCAGAGTGG
59
TTCCAGTTCCAAGACATTTCG
58
CTGTTCATGATAGCCAGGC
58
GATATTTCGAGAGCCCTGGA
59
CCCTATGTAAGGCATAAGATTCTC
58
TCATTGCATAAGGGAGACTCC
59
CTGTTCATGATAGCCAGGC
58
GATATTTCGAGAGCCCTGG
57
AGGCTATATCTATGGACTTTGG
57
TTGTCTAGCTCCTCTTTAATCC
57
ATACCATCACTGTCAGGCTG
59
GGAGAATCACTGGAACCCA
59

Subcellular localization of TAF2 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for TAF2:

GO ID
Protein
Source DB
GO:0000086
Q6P1X5 (UniProtKB)
IMP
GO:0001129
Q6P1X5 (UniProtKB)
IBA
GO:0003682
Q6P1X5 (UniProtKB)
IBA
GO:0005515
Q6P1X5 (UniProtKB)
IPI
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005654
Q6P1X5 (UniProtKB)
TAS
GO:0005669
Q6P1X5 (UniProtKB)
IDA
GO:0005669
Q6P1X5 (UniProtKB)
IDA
GO:0006366
Q6P1X5 (UniProtKB)
TAS
GO:0006367
Q6P1X5 (UniProtKB)
IDA
GO:0006367
Q6P1X5 (UniProtKB)
TAS
GO:0006367
Q6P1X5 (UniProtKB)
TAS
GO:0006368
Q6P1X5 (UniProtKB)
TAS
GO:0006508
Q6P1X5 (UniProtKB)
IEA
GO:0008237
Q6P1X5 (UniProtKB)
IEA
GO:0008270
Q6P1X5 (UniProtKB)
IEA
GO:0014070
Q6P1X5 (UniProtKB)
IEA
GO:0033276
Q6P1X5 (UniProtKB)
IDA
GO:0043565
Q6P1X5 (UniProtKB)
IBA
GO:0044212
Q6P1X5 (UniProtKB)
IMP
GO:0045944
Q6P1X5 (UniProtKB)
IMP
GO:0051123
Q6P1X5 (UniProtKB)
IEA
GO:0051123
Q6P1X5 (UniProtKB)
IEA
GO:1901796
Q6P1X5 (UniProtKB)
TAS
GO:0005669
Q6P1X5 (UniProtKB)
IDA
GO:0005669
Q6P1X5 (UniProtKB)
IDA
GO:0001075
Q6P1X5 (UniProtKB)
IBA

microRNAs potentially regulating TAF2:     

String
BioGrid
IntAct
mentha
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Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
MENTAL RETARDATION, AUTOSOMAL RECESSIVE 40 0.36 1 1 CLINVAR_ORPHANET_UNIPROT
Intellectual Disability 0.120542884 3 0 BeFree_CTD_human
Spinocerebellar Ataxia Type 7 0.000271442 1 0 BeFree
Central neuroblastoma 0.000271442 1 0 BeFree
Neuroblastoma 0.000271442 1 0 BeFree
Neurodegenerative Disorders 0.000271442 1 0 BeFree
Measles 0.000271442 1 0 BeFree
Cross-omics interpretable neural network for discovery of molecular markers in prostate cancer.
Chen X, Yi S, Yuemaierabola A, Liu Y, He L, Ma J, Guo W, Sun G Comput Biol Chem IF: 3.4 2026-06-00
A recently evolved TAF8 isoform arising from an Alu insertion increases TFIID assembly complexity in the human lineage.
Bernardini A, Gallo A, Scheer E, Morlet B, Dolfini D, Mantovani R, Vincent SD, Tora L bioRxiv 2026-01-19
Cytoplasmic TAF2-TAF8-TAF10 complex provides evidence for nuclear holo-TFIID assembly from preformed submodules.
Trowitzsch Simon, Viola Cristina, Scheer Elisabeth, Conic Sascha, Chavant Virginie, Fournier Marjorie, Papai Gabor, Ebong Ima-Obong, Schaffitzel Christiane, Zou Juan, Haffke Matthias, Rappsilber Juri, Robinson Carol V, Schultz Patrick, Tora Laszlo, Berger Imre Nat Commun IF: 12.124 2016-02-08
Structure of promoter-bound TFIID and model of human pre-initiation complex assembly.
Louder Robert K, He Yuan, López-Blanco José Ramón, Fang Jie, Chacón Pablo, Nogales Eva Nature IF: 56.1 2016-04-20
Microcephaly thin corpus callosum intellectual disability syndrome caused by mutated TAF2.
Hellman-Aharony Shlomit, Smirin-Yosef Pola, Halevy Ayelet, Pasmanik-Chor Metsada, Yeheskel Adva, Har-Zahav Adi, Maya Idit, Straussberg Rachel, Dahary Dvir, Haviv Ami, Shohat Mordechai, Basel-Vanagaite Lina Pediatr Neurol IF: 2.0 2014-07-11
Genome-wide pathway analysis of a genome-wide association study on multiple sclerosis.
Song Gwan Gyu, Choi Sung Jae, Ji Jong Dae, Lee Young Ho Mol Biol Rep IF: 3.2 2014-03-03
Frequent MYC coamplification and DNA hypomethylation of multiple genes on 8q in 8p11-p12-amplified breast carcinomas.
Parris T Z, Kovács A, Hajizadeh S, Nemes S, Semaan M, Levin M, Karlsson P, Helou K Oncogenesis IF: 6.0 2014-03-25
Targeting TBP-Associated Factors in Ovarian Cancer.
Ribeiro Jennifer R, Lovasco Lindsay A, Vanderhyden Barbara C, Freiman Richard N Front Oncol IF: 3.4 2014-06-24
Microcephaly-thin corpus callosum syndrome maps to 8q23.2-q24.12.
Halevy Ayelet, Basel-Vanagaite Lina, Shuper Avinoam, Helman Shlomit, Har-Zahav Adi, Birk Efrat, Maya Idit, Kornreich Liora, Inbar Dov, Nürnberg Gudrun, Nürnberg Peter, Steinberg Tamar, Straussberg Rachel Pediatr Neurol IF: 2.0 2013-03-29

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